PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1KG280600.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 538aa    MW: 55337.1 Da    PI: 9.4686
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1KG280600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.77.3e-12319364555
                          HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          h+++Er RR+ri +++  L+el+P+a      K +Ka++L + ++Y+k Lq
  Pavir.1KG280600.1.p 319 HSIAERLRRERIAERMKSLQELVPNA-----NKTDKASMLDEIIDYVKFLQ 364
                          99***********************8.....6******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.47E-12312368No hitNo description
SuperFamilySSF474591.3E-16312373IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.282314363IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.2E-16316373IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.1E-9319364IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.9E-13320369IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 538 aa     Download sequence    Send to blast
MCAKIVPHEL ARPRFQYLNI LMDSHKFTWL NSSFGSPNKL NLKCQCVAGT KLSFVFFFKK  60
KLKLADPVIK PRESRAPHPS LLPPTLHFRS SFTQLRHRDH AAASISAMQP SGREMAGGEG  120
GPQQADDFFD QMLSTLPSAW ADLGAGGTKS PWELSEGAED AAVQAAFGDD SSALLVSRLR  180
QHQIGGDVKS PSSSSPVMLQ LSDLHRHGGG LAGAGAEESA GFSPLPLFTD RSAPAREEME  240
GGFRSPNSAQ GGDHSLFNGF GMHGAAAVQP QFGQGGGSVS PQSLGGPAVS GGATTPAGGA  300
APPRQVRQRA RRGQATDPHS IAERLRRERI AERMKSLQEL VPNANKTDKA SMLDEIIDYV  360
KFLQLQVKVL SMSRLGGAAG LAPLVASMSS EANSNGGGSN SGGGGAKGSA ATKANGSGGG  420
ENGGLRVAEN QVAKMMEEDM GTAMQYLQGK GLCLMPISLA SAISSATSST SLLSRPPPVL  480
RHPAASASPA PPGQLHDGSN GFAAANAATS PASASSAGGG GDDPRSTKDA VCGGGKQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1323328RLRRER
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0620762e-60BT062076.1 Zea mays full-length cDNA clone ZM_BFb0212P11 mRNA, complete cds.
GenBankKJ7279382e-60KJ727938.1 Zea mays clone pUT6033 bHLH transcription factor (bHLH88) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004964663.10.0PREDICTED: transcription factor bHLH82
TrEMBLI1H0C61e-151I1H0C6_BRADI; Uncharacterized protein
STRINGBRADI1G47350.11e-150(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141937118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30980.14e-33LJRHL1-like 2